frontiers2017

MASTER:
DEV:
iss39:
iss37:

Installation

Put dataset on the EC2 Server:

via https://www.rstudio.com/products/rstudio/download-server/

git config --global core.editor "vim"
sudo apt-get update
sudo apt-get -y install r-base libssl-dev libcurl4-openssl-dev libxml2-dev libapparmor1 gdebi-core mosh libgmp3-dev
wget https://download2.rstudio.org/rstudio-server-1.0.153-amd64.deb
yes | sudo gdebi rstudio-server-1.0.153-amd64.deb
sudo rstudio-server verify-installation
sudo rstudio-server license-manager status
sudo apt-get install -y awscli

Data Acquisition

aws configure
sudo adduser brian
#then log in as the user after setting a password
sudo mkdir -p /home/brian/Resilio\ Sync/data
sudo aws s3 cp s3://bc-frontiers-2017/realTimeData2017_08_16_13_23_42.rds /home/brian/Resilio\ Sync/data/realTimeData2017_08_16_13_23_42.rds
sudo aws s3 cp s3://bc-frontiers-2017/realTimeData2017_08_16_13_23_42.txt /home/brian/Resilio\ Sync/data/realTimeData2017_08_16_13_23_42.txt
sudo aws s3 cp s3://bc-frontiers-2017/realTimeData2017_09_24_12_25_56.rds /home/brian/Resilio\ Sync/data/realTimeData2017_09_24_12_25_56.rds
sudo su - brian
git clone git@github.com:bc/frontiers2017.git && cd frontiers2017/

Now in $R

install.packages('devtools', quiet=TRUE)
library(devtools)
install(quiet=TRUE)
test()

MBP->S3 disk

aws s3 cp ~/Resilio\ Sync/data/realTimeData2017_08_16_13_23_42.rds s3://bc-frontiers-2017/
aws s3 cp ~/Resilio\ Sync/data/realTimeData2017_09_24_12_25_56.rds s3://bc-frontiers-2017/

EC2 output–>MBP

scp -r ubuntu@ec2-54-215-246-21.us-west-1.compute.amazonaws.com:/home/ubuntu/output ~/Downloads

TODO

pick suggested reviewers

12k words including citations, but excluding abstract, igure captions, and funding statements, and acknowledgement and references. abstract 350 words, must have running title <= 5 words
All figures:
RGB TIFF format
300DPI

MUST indicate number of words and number of figures on the first page of the manuscript

Title Case for all headings, up to 5 indentation levels of headings allowed.
New paragraphs will be separated with a single empty line

Consider also giving a list of non-standard abbreviations at the end, immediately before the Acknowledgments.

minimum width 8.5cm, max width 20cm

Introduction has no subheadings
Results has no footnotes
Discussion:
Key findings
prior art to place the novelty in context
potential shortcomings and limitations on interpretations
integration into current understanding of the problme
how it advances current views
speculate on future direction of research
freely postulate theories that can be tested in the future

Include website URL’s as footnotes

upload the 35.7GB file as supplmentary material

figs + tables num max is 15

#Kian TODO
register here:
https://www.frontiersin.org/Registration/Register.aspx

Ideas

We know that the 7x3 diagram showing the bode plots is related to the A matrix. the first value (where Frequency in HZ ==0) shoul dbe the element for the A matrix. Let’s compare that A matrix vs the one we get from linear regression.

the 0HZ gain changes for different muscles, and for different outputs.
TODO Compute the bandwidth for each of the bode plots
TODO Compute the 0HZ gain for each of the plots
TODO get confidence interval for frequency responses (an example)
FRF = frequency response function

time constant - when you get a step input, how long does it take to reach 66% of the step function (exp(-t/tau))

our PI controller is a first order system